Type Exception Report
Message org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB
Description The server encountered an unexpected condition that prevented it from fulfilling the request.
Exception
javax.servlet.ServletException: org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:391) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:382) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:345) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:220) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
Root Cause
org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB org.glassfish.jersey.servlet.internal.ResponseWriter.rethrow(ResponseWriter.java:254) org.glassfish.jersey.servlet.internal.ResponseWriter.failure(ResponseWriter.java:236) org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:437) org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:275) org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) org.glassfish.jersey.internal.Errors.process(Errors.java:315) org.glassfish.jersey.internal.Errors.process(Errors.java:297) org.glassfish.jersey.internal.Errors.process(Errors.java:267) org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297) org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:252) org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1025) org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:382) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:345) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:220) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
Root Cause
java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB org.sbolstandard.core.impl.SBOLReaderImpl.read(SBOLReaderImpl.java:58) org.sbolstandard.core.SBOLFactory.read(SBOLFactory.java:58) de.unirostock.sems.cbext.recognizer.SbolRecognizer.getFormatByParsing(SbolRecognizer.java:94) de.unirostock.sems.cbext.Formatizer.guessFormat(Formatizer.java:172) de.unirostock.sems.cbarchive.web.importer.GitImporter.scanRepository(GitImporter.java:170) de.unirostock.sems.cbarchive.web.importer.GitImporter.scanRepository(GitImporter.java:161) de.unirostock.sems.cbarchive.web.importer.GitImporter.buildArchive(GitImporter.java:137) de.unirostock.sems.cbarchive.web.importer.GitImporter.importRepo(GitImporter.java:88) de.unirostock.sems.cbarchive.web.importer.GitImporter.importRepo(GitImporter.java:45) de.unirostock.sems.cbarchive.web.rest.ShareApi.downloadRemoteArchive(ShareApi.java:276) jdk.internal.reflect.GeneratedMethodAccessor43.invoke(Unknown Source) java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base/java.lang.reflect.Method.invoke(Method.java:566) org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81) org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151) org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171) org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152) org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104) org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387) org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331) org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103) org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:269) org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) org.glassfish.jersey.internal.Errors.process(Errors.java:315) org.glassfish.jersey.internal.Errors.process(Errors.java:297) org.glassfish.jersey.internal.Errors.process(Errors.java:267) org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297) org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:252) org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1025) org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:382) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:345) org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:220) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
Note The full stack trace of the root cause is available in the server logs.