HTTP Status 500 – Internal Server Error


Type Exception Report

Message org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB

Description The server encountered an unexpected condition that prevented it from fulfilling the request.

Exception

javax.servlet.ServletException: org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB
	org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:391)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:382)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:345)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:220)
	org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)

Root Cause

org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB
	org.glassfish.jersey.servlet.internal.ResponseWriter.rethrow(ResponseWriter.java:254)
	org.glassfish.jersey.servlet.internal.ResponseWriter.failure(ResponseWriter.java:236)
	org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:437)
	org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:275)
	org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
	org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
	org.glassfish.jersey.internal.Errors.process(Errors.java:315)
	org.glassfish.jersey.internal.Errors.process(Errors.java:297)
	org.glassfish.jersey.internal.Errors.process(Errors.java:267)
	org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
	org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:252)
	org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1025)
	org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:382)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:345)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:220)
	org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)

Root Cause

java.lang.NoClassDefFoundError: Could not initialize class org.sbolstandard.core.impl.JAXB
	org.sbolstandard.core.impl.SBOLReaderImpl.read(SBOLReaderImpl.java:58)
	org.sbolstandard.core.SBOLFactory.read(SBOLFactory.java:58)
	de.unirostock.sems.cbext.recognizer.SbolRecognizer.getFormatByParsing(SbolRecognizer.java:94)
	de.unirostock.sems.cbext.Formatizer.guessFormat(Formatizer.java:172)
	de.unirostock.sems.cbarchive.web.importer.GitImporter.scanRepository(GitImporter.java:170)
	de.unirostock.sems.cbarchive.web.importer.GitImporter.scanRepository(GitImporter.java:161)
	de.unirostock.sems.cbarchive.web.importer.GitImporter.scanRepository(GitImporter.java:161)
	de.unirostock.sems.cbarchive.web.importer.GitImporter.buildArchive(GitImporter.java:137)
	de.unirostock.sems.cbarchive.web.importer.GitImporter.importRepo(GitImporter.java:88)
	de.unirostock.sems.cbarchive.web.importer.GitImporter.importRepo(GitImporter.java:45)
	de.unirostock.sems.cbarchive.web.rest.ShareApi.downloadRemoteArchive(ShareApi.java:276)
	jdk.internal.reflect.GeneratedMethodAccessor43.invoke(Unknown Source)
	java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	java.base/java.lang.reflect.Method.invoke(Method.java:566)
	org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
	org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
	org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
	org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
	org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
	org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
	org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
	org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
	org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:269)
	org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
	org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
	org.glassfish.jersey.internal.Errors.process(Errors.java:315)
	org.glassfish.jersey.internal.Errors.process(Errors.java:297)
	org.glassfish.jersey.internal.Errors.process(Errors.java:267)
	org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
	org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:252)
	org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1025)
	org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:382)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:345)
	org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:220)
	org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)

Note The full stack trace of the root cause is available in the server logs.


Apache Tomcat/9.0.50